Variant report

Variant	rs9559749
Chromosome Location	chr13:110900687-110900688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110884811..110886998-chr13:110899690..110902649,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs693831	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs7139637	0.81[CEU][hapmap]
rs7337819	0.88[CHB][hapmap];0.88[EUR][1000 genomes]
rs7338606	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs751749	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9515173	0.83[EUR][1000 genomes]
rs9521665	0.80[CHB][hapmap]
rs9521666	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs9521673	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:110884200-110902200	Weak transcription	HMEC	breast
3	chr13:110884600-110902400	Weak transcription	NHEK	skin
4	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110889600-110904200	Enhancers	NHDF-Ad	bronchial
6	chr13:110890800-110901800	Enhancers	Fetal Heart	heart
7	chr13:110891400-110908600	Weak transcription	Psoas Muscle	Psoas
8	chr13:110894600-110912200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:110895200-110903800	Enhancers	Colon Smooth Muscle	Colon
10	chr13:110895600-110903800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:110896000-110904400	Enhancers	NHLF	lung
12	chr13:110896200-110904400	Enhancers	Rectal Smooth Muscle	rectum
13	chr13:110896800-110902200	Genic enhancers	Osteobl	bone
14	chr13:110896800-110904400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:110897400-110900800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr13:110897400-110901000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:110897800-110900800	Enhancers	HSMM	muscle
18	chr13:110897800-110914200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:110897800-110914800	Weak transcription	Stomach Mucosa	stomach
20	chr13:110898200-110900800	Weak transcription	Aorta	Aorta
21	chr13:110898200-110900800	Weak transcription	Spleen	Spleen
22	chr13:110898600-110901200	Enhancers	HUVEC	blood vessel
23	chr13:110898800-110900800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr13:110898800-110900800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr13:110898800-110901000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr13:110899000-110901000	Enhancers	Fetal Brain Male	brain
27	chr13:110899000-110901600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr13:110899000-110902800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr13:110899000-110904200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:110899200-110901600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr13:110899200-110903000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr13:110899400-110900800	Weak transcription	Fetal Intestine Small	intestine
33	chr13:110899400-110901200	Enhancers	NH-A	brain
34	chr13:110899400-110902600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr13:110899400-110903200	Enhancers	Fetal Lung	lung
36	chr13:110899400-110907400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr13:110899400-110907400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr13:110899600-110900800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr13:110899600-110903400	Weak transcription	Small Intestine	intestine
40	chr13:110900000-110908600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr13:110900000-110916200	Weak transcription	A549	lung
42	chr13:110900200-110903000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr13:110900400-110900800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr13:110900400-110900800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr13:110900400-110901000	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr13:110900400-110902000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:110900400-110902000	Genic enhancers	Fetal Muscle Trunk	muscle
48	chr13:110900400-110902000	Enhancers	Placenta	Placenta
49	chr13:110900400-110902000	Enhancers	Left Ventricle	heart
50	chr13:110900400-110902200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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