Variant report

Variant	rs9521692
Chromosome Location	chr13:110974058-110974059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12877336	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7989565	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs9515190	0.90[EUR][1000 genomes]
rs9521691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9521693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9521694	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs9521696	0.84[CEU][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110962000-110978600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:110962600-110989200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr13:110964400-110975600	Weak transcription	Colonic Mucosa	Colon
4	chr13:110965200-110976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:110966600-110976000	Weak transcription	Brain Anterior Caudate	brain
6	chr13:110966800-110979400	Weak transcription	Fetal Brain Male	brain
7	chr13:110969600-110979000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:110969800-110975600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr13:110969800-110975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:110969800-110980200	Enhancers	Rectal Smooth Muscle	rectum
11	chr13:110969800-110983200	Enhancers	Fetal Heart	heart
12	chr13:110970200-110978800	Weak transcription	Fetal Intestine Large	intestine
13	chr13:110970400-110974600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr13:110970400-110976000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:110971600-110974800	Weak transcription	Fetal Intestine Small	intestine
16	chr13:110971800-110976800	Enhancers	NHDF-Ad	bronchial
17	chr13:110972000-110975400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr13:110972200-110974400	Weak transcription	Brain Hippocampus Middle	brain
19	chr13:110972200-110974400	Weak transcription	Pancreas	Pancrea
20	chr13:110972200-110976000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr13:110972400-110974400	Weak transcription	Fetal Stomach	stomach
22	chr13:110972400-110974400	Weak transcription	Spleen	Spleen
23	chr13:110972400-110974600	Weak transcription	Ovary	ovary
24	chr13:110972400-110974600	Enhancers	Stomach Smooth Muscle	stomach
25	chr13:110972400-110976200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr13:110972600-110974200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr13:110972600-110974200	Weak transcription	Aorta	Aorta
28	chr13:110972600-110974200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr13:110972600-110974600	Weak transcription	Lung	lung
30	chr13:110972600-110975400	Weak transcription	Fetal Lung	lung
31	chr13:110972600-110975800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr13:110972600-110976000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr13:110972600-110976600	Enhancers	Adipose Nuclei	Adipose
34	chr13:110972600-110978800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr13:110972600-110978800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr13:110972600-110979200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr13:110972600-111007200	Weak transcription	Gastric	stomach
38	chr13:110972800-110974200	Weak transcription	Left Ventricle	heart
39	chr13:110972800-110974400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:110972800-110974400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr13:110972800-110974400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr13:110972800-110974600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr13:110972800-110974600	Weak transcription	Psoas Muscle	Psoas
44	chr13:110972800-110975200	Weak transcription	HSMMtube	muscle
45	chr13:110972800-110975600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr13:110972800-110976800	Enhancers	Muscle Satellite Cultured Cells	--
47	chr13:110972800-110995000	Weak transcription	Esophagus	oesophagus
48	chr13:110973000-110975600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:110973000-110976000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr13:110973000-110977400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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