Variant report

Variant	rs9524350
Chromosome Location	chr13:94829497-94829498
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10129085	0.85[CHB][hapmap]
rs10161943	0.84[JPT][hapmap]
rs1328821	0.83[JPT][hapmap]
rs1328822	0.84[JPT][hapmap]
rs16949545	0.85[CHB][hapmap]
rs35479091	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4142203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492696	0.86[CHB][hapmap];0.97[CHD][hapmap];0.89[ASN][1000 genomes]
rs7329986	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7330605	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];0.99[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561507	0.84[JPT][hapmap]
rs9589918	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933263	chr13:94711183-94897124	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1051276	chr13:94745995-94872494	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv526048	chr13:94767311-94880219	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv562754	chr13:94770794-94895346	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94822200-94834200	Weak transcription	Fetal Kidney	kidney
2	chr13:94824200-94832200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:94825400-94831000	Weak transcription	Fetal Lung	lung
4	chr13:94825600-94830400	Weak transcription	Fetal Stomach	stomach
5	chr13:94825600-94834200	Weak transcription	Fetal Heart	heart
6	chr13:94825800-94831000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:94827000-94830600	Weak transcription	Liver	Liver
8	chr13:94827000-94830800	Weak transcription	Colon Smooth Muscle	Colon
9	chr13:94827800-94830600	Weak transcription	HepG2	liver
10	chr13:94828400-94829600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr13:94828400-94829600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr13:94828400-94829600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:94828600-94829600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:94828600-94829600	Enhancers	Primary hematopoietic stem cells	blood
15	chr13:94828600-94829600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr13:94828600-94829600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr13:94829200-94830600	Weak transcription	Primary T cells from cord blood	blood
18	chr13:94829200-94834200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:94829400-94829600	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr13:94829400-94831000	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links