Variant report

Variant	rs9524842
Chromosome Location	chr13:95874769-95874770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95873940..95876786-chr13:95925021..95926772,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17189446	0.82[AMR][1000 genomes]
rs17268163	0.80[AMR][1000 genomes]
rs4363736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55983719	0.91[AFR][1000 genomes]
rs61965926	0.80[AMR][1000 genomes]
rs61965942	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61965943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516546	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9524832	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9524834	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9524838	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9524841	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9524844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9524849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9524854	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9524855	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9524857	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95842200-95898200	Weak transcription	NHDF-Ad	bronchial
2	chr13:95847800-95880400	Weak transcription	Ovary	ovary
3	chr13:95856400-95898200	Weak transcription	NHEK	skin
4	chr13:95858600-95880400	Weak transcription	Fetal Thymus	thymus
5	chr13:95859000-95874800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr13:95859000-95878800	Weak transcription	Esophagus	oesophagus
7	chr13:95859000-95879000	Weak transcription	Gastric	stomach
8	chr13:95859000-95885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:95859000-95887800	Weak transcription	HSMM	muscle
10	chr13:95859000-95901000	Weak transcription	Aorta	Aorta
11	chr13:95859200-95880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:95859200-95901400	Weak transcription	Primary T cells from cord blood	blood
13	chr13:95859200-95902200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr13:95860600-95878000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr13:95860600-95879000	Weak transcription	Fetal Stomach	stomach
16	chr13:95861600-95906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:95861800-95899000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr13:95862000-95898200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr13:95862200-95898200	Weak transcription	HSMMtube	muscle
20	chr13:95862400-95879000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr13:95862800-95878000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr13:95863000-95878200	Weak transcription	Fetal Intestine Small	intestine
23	chr13:95863000-95898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:95863200-95883400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr13:95863200-95895400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:95865800-95878800	Weak transcription	Left Ventricle	heart
27	chr13:95866200-95878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr13:95866200-95887600	Weak transcription	HUVEC	blood vessel
29	chr13:95866200-95897400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr13:95866200-95897600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr13:95871600-95874800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr13:95872000-95876400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:95872000-95878200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:95872000-95897600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr13:95872200-95878600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr13:95872200-95897400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:95874200-95874800	Enhancers	Lung	lung
38	chr13:95874200-95874800	Enhancers	Small Intestine	intestine
39	chr13:95874200-95874800	Enhancers	Stomach Mucosa	stomach
40	chr13:95874200-95875000	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr13:95874200-95875000	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr13:95874200-95875200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr13:95874400-95874800	Enhancers	Duodenum Mucosa	Duodenum
44	chr13:95874400-95874800	Enhancers	Pancreas	Pancrea
45	chr13:95874400-95874800	Enhancers	NHLF	lung
46	chr13:95874400-95875000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:95874400-95875000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr13:95874400-95875000	Enhancers	K562	blood
49	chr13:95874400-95875200	Enhancers	A549	lung
50	chr13:95874600-95874800	Enhancers	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links