Variant report

Variant	rs61965926
Chromosome Location	chr13:95854661-95854662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17189446	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17268122	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17268163	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4363736	0.80[AMR][1000 genomes]
rs61965908	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61965909	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61965911	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61965914	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61965943	0.80[AMR][1000 genomes]
rs9524832	0.85[AMR][1000 genomes]
rs9524838	0.85[AMR][1000 genomes]
rs9524842	0.80[AMR][1000 genomes]
rs9524844	0.80[AMR][1000 genomes]
rs9524849	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv562768	chr13:95849817-95858686	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
2	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
3	chr13:95813200-95858000	Weak transcription	Aorta	Aorta
4	chr13:95827400-95872400	Weak transcription	NH-A	brain
5	chr13:95829400-95856000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:95830400-95857800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:95830400-95857800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr13:95833600-95856800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:95833800-95855400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:95833800-95856600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:95833800-95859800	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:95834000-95865400	Weak transcription	Psoas Muscle	Psoas
13	chr13:95838200-95867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr13:95839200-95857000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr13:95839400-95857200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr13:95839400-95857800	Weak transcription	Primary T cells from cord blood	blood
17	chr13:95839400-95863800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr13:95839600-95856800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr13:95839600-95857800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr13:95840400-95874400	Weak transcription	Pancreas	Pancrea
21	chr13:95842000-95855600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr13:95842000-95856000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr13:95842000-95857800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:95842000-95864800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr13:95842000-95869000	Weak transcription	Fetal Kidney	kidney
26	chr13:95842200-95898200	Weak transcription	NHDF-Ad	bronchial
27	chr13:95844400-95864400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr13:95844400-95865600	Weak transcription	Spleen	Spleen
29	chr13:95844400-95867600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr13:95844600-95858400	Weak transcription	HSMM	muscle
31	chr13:95844600-95863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:95845000-95857000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:95846000-95871400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:95846200-95858400	Weak transcription	HepG2	liver
35	chr13:95846200-95859400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr13:95846200-95872400	Weak transcription	Brain Anterior Caudate	brain
37	chr13:95846400-95856200	Weak transcription	Gastric	stomach
38	chr13:95846600-95855200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr13:95846600-95855800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr13:95846600-95857600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr13:95846600-95857600	Weak transcription	Fetal Intestine Large	intestine
42	chr13:95846800-95855000	Weak transcription	Fetal Intestine Small	intestine
43	chr13:95846800-95856000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr13:95847200-95856000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr13:95847800-95855200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr13:95847800-95855600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:95847800-95856000	Weak transcription	Fetal Stomach	stomach
48	chr13:95847800-95856400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr13:95847800-95860200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr13:95847800-95868200	Weak transcription	Fetal Lung	lung

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