Variant report

Variant	rs61965911
Chromosome Location	chr13:95843794-95843795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:95843500..95844639-chr13:96055881..96056848,6	K562	blood:
2	chr13:95843719..95844609-chr13:96033049..96033649,3	MCF-7	breast:
3	chr13:95843758..95844705-chr13:96056220..96057135,5	MCF-7	breast:
4	chr13:95841320..95844178-chr13:95952449..95954025,2	MCF-7	breast:
5	chr13:95843632..95844184-chr2:220506969..220507827,2	MCF-7	breast:
6	chr13:95843651..95844564-chr13:96056296..96057006,3	MCF-7	breast:
7	chr13:95838565..95840838-chr13:95843136..95844913,2	K562	blood:
8	chr13:95843696..95844640-chr13:96032651..96033707,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000125257	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1479389	0.81[EUR][1000 genomes]
rs17189446	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17268122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17268163	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61965908	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61965909	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61965914	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61965926	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:95807000-95846000	Weak transcription	Brain Substantia Nigra	brain
3	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
4	chr13:95807200-95844400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
6	chr13:95808400-95854600	Weak transcription	NHEK	skin
7	chr13:95813200-95858000	Weak transcription	Aorta	Aorta
8	chr13:95815000-95844200	Weak transcription	Fetal Muscle Leg	muscle
9	chr13:95815200-95847800	Weak transcription	Hela-S3	cervix
10	chr13:95823600-95844400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:95827400-95872400	Weak transcription	NH-A	brain
12	chr13:95828600-95844200	Weak transcription	HSMM	muscle
13	chr13:95829400-95856000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr13:95830400-95845400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:95830400-95845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:95830400-95857800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:95830400-95857800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr13:95831600-95844200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:95831600-95845200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr13:95831600-95845600	Weak transcription	Fetal Intestine Large	intestine
21	chr13:95833000-95845600	Weak transcription	Brain Hippocampus Middle	brain
22	chr13:95833600-95856800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:95833800-95844000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr13:95833800-95846000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr13:95833800-95855400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr13:95833800-95856600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr13:95833800-95859800	Weak transcription	Colon Smooth Muscle	Colon
28	chr13:95834000-95844200	Weak transcription	Ovary	ovary
29	chr13:95834000-95846000	Weak transcription	Gastric	stomach
30	chr13:95834000-95865400	Weak transcription	Psoas Muscle	Psoas
31	chr13:95834200-95845400	Weak transcription	HepG2	liver
32	chr13:95834400-95844200	Weak transcription	Lung	lung
33	chr13:95834400-95845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr13:95834400-95849200	Weak transcription	K562	blood
35	chr13:95838200-95867400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr13:95839200-95844400	Weak transcription	NHLF	lung
37	chr13:95839200-95857000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr13:95839400-95844200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr13:95839400-95845400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr13:95839400-95845400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr13:95839400-95857200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr13:95839400-95857800	Weak transcription	Primary T cells from cord blood	blood
43	chr13:95839400-95863800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr13:95839600-95847000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr13:95839600-95856800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr13:95839600-95857800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr13:95839800-95844200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:95840400-95874400	Weak transcription	Pancreas	Pancrea
49	chr13:95840800-95844000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:95840800-95844200	Weak transcription	Fetal Lung	lung

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