Variant report

Variant	rs9526708
Chromosome Location	chr13:51500691-51500692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51484487..51486944-chr13:51500035..51502322,2	K562	blood:

Variant related genes	Relation type
ENSG00000233672	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1328360	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17589481	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1870839	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942941	1.00[ASN][1000 genomes]
rs7994724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9526704	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526705	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535516	1.00[ASN][1000 genomes]
rs9535524	1.00[ASN][1000 genomes]
rs9535525	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535528	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535530	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535532	0.89[EUR][1000 genomes]
rs9591369	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9526708	RNASEH2B-AS1	cis	Thyroid	GTEx

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51485400-51504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:51489600-51508200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
5	chr13:51493800-51504800	Weak transcription	Right Ventricle	heart
6	chr13:51494000-51502400	Weak transcription	Fetal Heart	heart
7	chr13:51496600-51503800	Weak transcription	Left Ventricle	heart
8	chr13:51496600-51504200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr13:51496600-51508200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:51496800-51508600	Weak transcription	Fetal Kidney	kidney
12	chr13:51496800-51510600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:51496800-51533200	Weak transcription	NH-A	brain
14	chr13:51497000-51503200	Weak transcription	Thymus	Thymus
15	chr13:51498200-51501600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr13:51498400-51508600	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:51499000-51502600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr13:51499000-51508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:51499000-51509000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr13:51499200-51501400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr13:51499200-51502400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr13:51499400-51503600	Genic enhancers	Dnd41	blood
23	chr13:51499600-51501600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr13:51499600-51506400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:51499600-51511800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr13:51499800-51501200	Weak transcription	Fetal Lung	lung
27	chr13:51499800-51502800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr13:51499800-51503800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr13:51500000-51501200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr13:51500000-51503200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr13:51500000-51506800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr13:51500000-51507200	Weak transcription	Brain Anterior Caudate	brain
33	chr13:51500200-51501800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:51500200-51502200	Weak transcription	Primary B cells from cord blood	blood
35	chr13:51500200-51502800	Weak transcription	Fetal Thymus	thymus
36	chr13:51500200-51503200	Weak transcription	Esophagus	oesophagus
37	chr13:51500200-51503400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr13:51500200-51503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr13:51500200-51506600	Weak transcription	Aorta	Aorta
40	chr13:51500200-51508600	Weak transcription	Pancreas	Pancrea
41	chr13:51500400-51501400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr13:51500400-51502400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr13:51500400-51502400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr13:51500400-51503400	Weak transcription	Primary T cells from cord blood	blood
45	chr13:51500400-51503400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr13:51500400-51506600	Weak transcription	Fetal Intestine Small	intestine
47	chr13:51500600-51501000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr13:51500600-51503600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr13:51500600-51506800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr13:51500600-51507000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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