Variant report

Variant	rs9535532
Chromosome Location	chr13:51502998-51502999
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr13:51502788-51502998	K562	blood:	n/a	n/a
2	MYC	chr13:51502746-51503069	NB4	blood:	n/a	n/a
3	MYC	chr13:51502883-51503348	K562	blood:	n/a	chr13:51503254-51503263 chr13:51503253-51503263 chr13:51503255-51503262
4	MAX	chr13:51502764-51503043	K562	blood:	n/a	n/a
5	BHLHE40	chr13:51502732-51503379	K562	blood:	n/a	n/a
6	USF1	chr13:51502800-51503069	K562	blood:	n/a	n/a
7	MAX	chr13:51502757-51503083	NB4	blood:	n/a	n/a
8	TAL1	chr13:51502778-51503098	K562	blood:	n/a	n/a
9	MAX	chr13:51502758-51503056	K562	blood:	n/a	n/a
10	POLR2A	chr13:51502869-51503315	K562	blood:	n/a	n/a
11	GATA1	chr13:51502634-51503973	PBDE	blood:	n/a	chr13:51503100-51503110
12	POLR2A	chr13:51502726-51503039	SK-N-MC	brain:	n/a	n/a
13	ZNF384	chr13:51502770-51503391	K562	blood:	n/a	n/a
14	RCOR1	chr13:51502817-51503012	K562	blood:	n/a	n/a
15	CEBPB	chr13:51502818-51503018	K562	blood:	n/a	n/a

Variant related genes	Relation type
RNASEH2B	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1328360	0.88[EUR][1000 genomes]
rs2441	0.86[EUR][1000 genomes]
rs9526704	0.89[EUR][1000 genomes]
rs9526705	0.94[EUR][1000 genomes]
rs9526708	0.89[EUR][1000 genomes]
rs9535525	0.92[EUR][1000 genomes]
rs9535528	0.89[EUR][1000 genomes]
rs9535530	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9535532	RNASEH2B	cis	Muscle Skeletal	GTEx
rs9535532	RNASEH2B-AS1	cis	Thyroid	GTEx

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51485400-51504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:51489600-51508200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
5	chr13:51493800-51504800	Weak transcription	Right Ventricle	heart
6	chr13:51496600-51503800	Weak transcription	Left Ventricle	heart
7	chr13:51496600-51504200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr13:51496600-51508200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:51496800-51508600	Weak transcription	Fetal Kidney	kidney
11	chr13:51496800-51510600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:51496800-51533200	Weak transcription	NH-A	brain
13	chr13:51497000-51503200	Weak transcription	Thymus	Thymus
14	chr13:51498400-51508600	Weak transcription	Brain Hippocampus Middle	brain
15	chr13:51499000-51508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:51499000-51509000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:51499400-51503600	Genic enhancers	Dnd41	blood
18	chr13:51499600-51506400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:51499600-51511800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:51499800-51503800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr13:51500000-51503200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr13:51500000-51506800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:51500000-51507200	Weak transcription	Brain Anterior Caudate	brain
24	chr13:51500200-51503200	Weak transcription	Esophagus	oesophagus
25	chr13:51500200-51503400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr13:51500200-51503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr13:51500200-51506600	Weak transcription	Aorta	Aorta
28	chr13:51500200-51508600	Weak transcription	Pancreas	Pancrea
29	chr13:51500400-51503400	Weak transcription	Primary T cells from cord blood	blood
30	chr13:51500400-51503400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr13:51500400-51506600	Weak transcription	Fetal Intestine Small	intestine
32	chr13:51500600-51503600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr13:51500600-51506800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr13:51500600-51507000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr13:51501200-51503600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr13:51501200-51503800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr13:51501200-51504000	Enhancers	Fetal Lung	lung
38	chr13:51501200-51509000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr13:51501400-51503000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr13:51501400-51503200	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr13:51501400-51503400	Weak transcription	GM12878-XiMat	blood
42	chr13:51501400-51503600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr13:51501400-51504800	Weak transcription	Fetal Intestine Large	intestine
44	chr13:51501400-51508000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr13:51501400-51508200	Weak transcription	Fetal Brain Male	brain
46	chr13:51501600-51503400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr13:51501600-51503600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr13:51501600-51504800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr13:51501600-51506600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr13:51501600-51508800	Weak transcription	Brain Cingulate Gyrus	brain

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