Variant report

Variant	rs9526804
Chromosome Location	chr13:52467354-52467355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52463714..52466510-chr13:52467238..52469921,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1114598	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11619076	1.00[CHB][hapmap]
rs1815392	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1924610	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2408529	1.00[CEU][hapmap]
rs2408530	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2408531	0.92[EUR][1000 genomes]
rs2408533	0.84[EUR][1000 genomes]
rs4287464	1.00[CEU][hapmap]
rs4497564	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs647575	0.93[ASN][1000 genomes]
rs6561652	1.00[ASN][1000 genomes]
rs7333241	1.00[CEU][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.96[EUR][1000 genomes]
rs7334073	1.00[CEU][hapmap]
rs7338168	0.96[EUR][1000 genomes]
rs7986191	1.00[CEU][hapmap]
rs7996040	0.87[ASN][1000 genomes]
rs932912	0.92[EUR][1000 genomes]
rs9535785	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596608	0.87[ASN][1000 genomes]
rs965620	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52433800-52479400	Weak transcription	HepG2	liver
2	chr13:52457400-52480200	Weak transcription	Liver	Liver
3	chr13:52463800-52477000	Weak transcription	Fetal Intestine Small	intestine
4	chr13:52464600-52494400	Weak transcription	Aorta	Aorta
5	chr13:52466000-52469600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:52466000-52469600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:52466400-52467400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr13:52466400-52467400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:52466600-52467400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:52467000-52470200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr13:52467200-52467400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:52467200-52467600	Enhancers	Fetal Lung	lung

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