Variant report

Variant	rs9530937
Chromosome Location	chr13:80177836-80177837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2146592	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7990151	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7997134	0.81[EUR][1000 genomes]
rs928640	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9601251	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9601252	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80170200-80178800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:80172000-80178800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:80177600-80178000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:80177600-80178200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:80177600-80178400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:80177600-80178600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:80177800-80178800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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