Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2146593	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876741	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4884135	0.89[ASN][1000 genomes]
rs4885651	0.91[ASN][1000 genomes]
rs7329551	0.91[ASN][1000 genomes]
rs7336082	0.91[ASN][1000 genomes]
rs7989227	0.91[ASN][1000 genomes]
rs7990151	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7990179	0.91[ASN][1000 genomes]
rs7997134	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs928640	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9530937	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9545149	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9545151	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565512	0.91[ASN][1000 genomes]
rs9565513	0.91[ASN][1000 genomes]
rs9565514	0.91[ASN][1000 genomes]
rs9565515	0.91[ASN][1000 genomes]
rs9574441	0.91[ASN][1000 genomes]
rs9574445	0.91[ASN][1000 genomes]
rs9574448	0.90[ASN][1000 genomes]
rs9593407	0.90[ASN][1000 genomes]
rs9601251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9601252	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80178800-80180600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:80179000-80182200	Weak transcription	Gastric	stomach
3	chr13:80179600-80180400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:80180000-80180600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:80180200-80188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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