Variant report

Variant	rs9565513
Chromosome Location	chr13:80205647-80205648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2146592	0.91[ASN][1000 genomes]
rs2146593	0.91[ASN][1000 genomes]
rs2876741	0.92[ASN][1000 genomes]
rs4884135	0.98[ASN][1000 genomes]
rs4885651	1.00[ASN][1000 genomes]
rs7329551	1.00[ASN][1000 genomes]
rs7336082	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989227	1.00[ASN][1000 genomes]
rs7990151	0.89[ASN][1000 genomes]
rs7990179	1.00[ASN][1000 genomes]
rs7997134	0.99[ASN][1000 genomes]
rs928640	0.91[ASN][1000 genomes]
rs9545149	0.87[ASN][1000 genomes]
rs9545151	0.91[ASN][1000 genomes]
rs9565512	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565514	1.00[ASN][1000 genomes]
rs9565515	1.00[ASN][1000 genomes]
rs9574441	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9574445	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9574448	0.99[ASN][1000 genomes]
rs9593407	0.99[ASN][1000 genomes]
rs9601251	0.93[ASN][1000 genomes]
rs9601252	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80203000-80206200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:80203000-80211200	Weak transcription	Adipose Nuclei	Adipose
3	chr13:80204200-80206600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr13:80204200-80206600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:80204400-80206600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:80204600-80206400	Enhancers	HMEC	breast
7	chr13:80204800-80206000	Enhancers	NHEK	skin
8	chr13:80204800-80206200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:80204800-80206600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:80205000-80205800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:80205000-80205800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr13:80205200-80205800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:80205200-80205800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr13:80205200-80205800	Enhancers	Aorta	Aorta
15	chr13:80205200-80205800	Enhancers	Fetal Heart	heart
16	chr13:80205200-80205800	Enhancers	Hela-S3	cervix
17	chr13:80205200-80206000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:80205200-80206200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:80205200-80206200	Enhancers	Placenta	Placenta
20	chr13:80205400-80205800	Enhancers	Ovary	ovary
21	chr13:80205400-80205800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr13:80205400-80221200	Weak transcription	HSMM	muscle
23	chr13:80205600-80205800	Enhancers	HUVEC	blood vessel

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