Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1998452	0.83[AFR][1000 genomes]
rs2146592	0.91[ASN][1000 genomes]
rs2146593	0.91[ASN][1000 genomes]
rs2876741	0.92[ASN][1000 genomes]
rs2876745	0.81[AFR][1000 genomes]
rs4884135	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329551	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330910	0.82[AFR][1000 genomes]
rs7336082	1.00[ASN][1000 genomes]
rs7985510	0.83[AFR][1000 genomes]
rs7987038	0.80[AFR][1000 genomes]
rs7990151	0.89[ASN][1000 genomes]
rs7990179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997134	0.99[ASN][1000 genomes]
rs928640	0.91[ASN][1000 genomes]
rs9318646	0.81[AFR][1000 genomes]
rs9545149	0.87[ASN][1000 genomes]
rs9545151	0.91[ASN][1000 genomes]
rs9565512	1.00[ASN][1000 genomes]
rs9565513	1.00[ASN][1000 genomes]
rs9565514	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565515	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9574441	0.82[ASN][1000 genomes]
rs9574445	1.00[ASN][1000 genomes]
rs9574448	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9593407	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9601251	0.93[ASN][1000 genomes]
rs9601252	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80205400-80221200	Weak transcription	HSMM	muscle
2	chr13:80205800-80215000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr13:80206600-80216800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:80206600-80220000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:80212400-80217000	Weak transcription	Fetal Muscle Leg	muscle
6	chr13:80212600-80213600	Enhancers	HepG2	liver
7	chr13:80212600-80215200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr13:80213200-80216600	Weak transcription	Fetal Heart	heart

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