Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2146592	0.91[ASN][1000 genomes]
rs2146593	0.91[ASN][1000 genomes]
rs2876741	0.88[ASN][1000 genomes]
rs4884135	0.81[ASN][1000 genomes]
rs4885651	0.82[ASN][1000 genomes]
rs7329551	0.82[ASN][1000 genomes]
rs7336082	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7989227	0.82[ASN][1000 genomes]
rs7990151	0.89[ASN][1000 genomes]
rs7990179	0.82[ASN][1000 genomes]
rs7997134	0.83[ASN][1000 genomes]
rs928640	0.91[ASN][1000 genomes]
rs9545149	0.84[ASN][1000 genomes]
rs9545151	0.91[ASN][1000 genomes]
rs9565512	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9565513	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9565514	0.82[ASN][1000 genomes]
rs9565515	0.82[ASN][1000 genomes]
rs9574445	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9574448	0.81[ASN][1000 genomes]
rs9593407	0.81[ASN][1000 genomes]
rs9601251	0.89[ASN][1000 genomes]
rs9601252	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9574441	IMP3	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80164600-80169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:80168400-80171600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:80168600-80177600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:80168600-80177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:80168800-80169800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:80169400-80170000	Enhancers	HMEC	breast
7	chr13:80169400-80170200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr13:80169600-80169800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:80169600-80170200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:80169600-80170200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search: