Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2146592	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2146593	0.93[ASN][1000 genomes]
rs2876741	0.90[ASN][1000 genomes]
rs4884135	0.86[ASN][1000 genomes]
rs4885651	0.87[ASN][1000 genomes]
rs7329551	0.87[ASN][1000 genomes]
rs7336082	0.87[ASN][1000 genomes]
rs7989227	0.87[ASN][1000 genomes]
rs7990151	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7990179	0.87[ASN][1000 genomes]
rs7997134	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs928640	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9545151	0.93[ASN][1000 genomes]
rs9565512	0.87[ASN][1000 genomes]
rs9565513	0.87[ASN][1000 genomes]
rs9565514	0.87[ASN][1000 genomes]
rs9565515	0.87[ASN][1000 genomes]
rs9574441	0.84[ASN][1000 genomes]
rs9574445	0.87[ASN][1000 genomes]
rs9574448	0.87[ASN][1000 genomes]
rs9593407	0.87[ASN][1000 genomes]
rs9601251	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9601252	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80179000-80182200	Weak transcription	Gastric	stomach
2	chr13:80180200-80188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:80180400-80186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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