Variant report

Variant	rs9532273
Chromosome Location	chr13:39310195-39310196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39302546..39304316-chr13:39308350..39310303,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1037254	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2197887	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2442359	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2496434	0.82[ASN][1000 genomes]
rs2496437	0.82[ASN][1000 genomes]
rs2496446	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2496448	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2496449	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2496451	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548443	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548444	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs990909	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39294800-39325000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39304800-39310400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:39308000-39317600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:39308400-39310600	Enhancers	Fetal Intestine Small	intestine
6	chr13:39309200-39311200	Enhancers	Fetal Intestine Large	intestine
7	chr13:39309600-39313200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:39309800-39310200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr13:39309800-39310200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr13:39309800-39310200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:39309800-39310200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:39309800-39310200	Enhancers	Stomach Smooth Muscle	stomach
13	chr13:39309800-39310400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:39309800-39310800	Enhancers	Fetal Kidney	kidney
15	chr13:39309800-39311200	Enhancers	Pancreas	Pancrea
16	chr13:39310000-39310200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr13:39310000-39310200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:39310000-39310200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr13:39310000-39310400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:39310000-39310400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr13:39310000-39310600	Enhancers	Colon Smooth Muscle	Colon

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