Variant report

Variant	rs9548444
Chromosome Location	chr13:39316950-39316951
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1037254	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11147723	0.86[JPT][hapmap]
rs11147725	0.86[JPT][hapmap]
rs2197887	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2442359	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2442373	0.83[JPT][hapmap]
rs2496434	0.90[ASN][1000 genomes]
rs2496437	0.90[ASN][1000 genomes]
rs2496446	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2496448	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2496449	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2496451	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9532273	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9548443	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9634754	0.83[JPT][hapmap]
rs990909	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39294800-39325000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39308000-39317600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:39310800-39325400	Weak transcription	Fetal Kidney	kidney
5	chr13:39312200-39319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:39314000-39319600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:39316600-39317600	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links