Variant report

Variant	rs9535472
Chromosome Location	chr13:51185339-51185340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51185236..51187153-chr13:51484529..51486325,2	K562	blood:

Variant related genes	Relation type
ENSG00000233672	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1341633	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1861297	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2039100	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039101	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2110763	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192800	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192801	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3905103	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942932	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942933	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs630062	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706596	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7325508	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7325674	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7327141	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7328789	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7333895	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7334876	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7338717	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs797479	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs797481	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs797483	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs797485	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs797487	0.91[EUR][1000 genomes]
rs797532	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9526681	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9526684	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526685	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51181800-51204600	Weak transcription	Pancreas	Pancrea
2	chr13:51182800-51186000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr13:51183800-51186600	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51184400-51188200	Enhancers	Fetal Thymus	thymus
5	chr13:51184600-51188400	Enhancers	K562	blood
6	chr13:51185000-51185800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr13:51185000-51185800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr13:51185000-51186000	Enhancers	Primary T cells from cord blood	blood
9	chr13:51185000-51186400	Enhancers	Thymus	Thymus
10	chr13:51185000-51186600	Enhancers	Primary hematopoietic stem cells	blood
11	chr13:51185000-51186600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr13:51185200-51185400	Flanking Active TSS	Dnd41	blood
13	chr13:51185200-51185600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr13:51185200-51185600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr13:51185200-51185600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr13:51185200-51185800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr13:51185200-51185800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr13:51185200-51187000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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