Variant report

Variant	rs9535831
Chromosome Location	chr13:52577619-52577620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52576391..52578184-chr13:52580333..52583322,2	K562	blood:
2	chr13:52571069..52573595-chr13:52575661..52577767,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1122934	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4091568	1.00[ASN][1000 genomes]
rs4941729	1.00[ASN][1000 genomes]
rs55667430	0.87[ASN][1000 genomes]
rs55715265	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57345934	1.00[ASN][1000 genomes]
rs61957231	1.00[ASN][1000 genomes]
rs61957232	1.00[ASN][1000 genomes]
rs61957233	1.00[ASN][1000 genomes]
rs61957238	1.00[ASN][1000 genomes]
rs61957248	1.00[ASN][1000 genomes]
rs61957249	1.00[ASN][1000 genomes]
rs61957252	1.00[ASN][1000 genomes]
rs61957253	1.00[ASN][1000 genomes]
rs61957254	1.00[ASN][1000 genomes]
rs61957255	1.00[ASN][1000 genomes]
rs61957256	1.00[ASN][1000 genomes]
rs61957258	1.00[ASN][1000 genomes]
rs61957297	1.00[ASN][1000 genomes]
rs61958782	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958784	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958786	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958788	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958801	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958802	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958803	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958806	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958807	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958860	1.00[ASN][1000 genomes]
rs61958863	1.00[ASN][1000 genomes]
rs61958865	1.00[ASN][1000 genomes]
rs719349	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7333070	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73502305	1.00[ASN][1000 genomes]
rs73502307	1.00[ASN][1000 genomes]
rs9526818	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526840	1.00[ASN][1000 genomes]
rs9535814	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535818	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535838	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535839	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535850	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535852	1.00[ASN][1000 genomes]
rs9535859	1.00[ASN][1000 genomes]
rs9535869	1.00[ASN][1000 genomes]
rs9535870	1.00[ASN][1000 genomes]
rs9535875	1.00[ASN][1000 genomes]
rs9535881	1.00[ASN][1000 genomes]
rs9535886	1.00[ASN][1000 genomes]
rs9535890	1.00[ASN][1000 genomes]
rs9535892	1.00[ASN][1000 genomes]
rs9535893	1.00[ASN][1000 genomes]
rs9535894	1.00[ASN][1000 genomes]
rs9535897	1.00[ASN][1000 genomes]
rs9535900	1.00[ASN][1000 genomes]
rs9535901	1.00[ASN][1000 genomes]
rs9535902	1.00[ASN][1000 genomes]
rs9535903	1.00[ASN][1000 genomes]
rs9535906	1.00[ASN][1000 genomes]
rs9535909	1.00[ASN][1000 genomes]
rs9535910	1.00[ASN][1000 genomes]
rs9535911	1.00[ASN][1000 genomes]
rs9535913	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv1041996	chr13:52544805-52581501	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
6	esv2763022	chr13:52544978-52581513	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
7	nsv900082	chr13:52555288-52709938	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52570800-52585000	Weak transcription	Colonic Mucosa	Colon
2	chr13:52570800-52585200	Weak transcription	Aorta	Aorta
3	chr13:52571000-52583800	Weak transcription	Brain Germinal Matrix	brain
4	chr13:52573200-52578400	Weak transcription	Gastric	stomach
5	chr13:52574000-52584400	Weak transcription	Fetal Stomach	stomach
6	chr13:52574200-52577800	Weak transcription	Pancreas	Pancrea
7	chr13:52574200-52578800	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:52574200-52579000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:52574200-52584400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr13:52574200-52585000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:52574400-52579800	Weak transcription	Placenta	Placenta
12	chr13:52574400-52584400	Weak transcription	Psoas Muscle	Psoas
13	chr13:52574400-52584400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr13:52574400-52585000	Weak transcription	Left Ventricle	heart
15	chr13:52574400-52585200	Weak transcription	Lung	lung
16	chr13:52574600-52578800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr13:52574600-52584400	Weak transcription	Fetal Brain Female	brain
18	chr13:52574800-52578400	Weak transcription	Brain Angular Gyrus	brain
19	chr13:52574800-52578800	Enhancers	HepG2	liver
20	chr13:52575400-52578600	Weak transcription	Liver	Liver
21	chr13:52575400-52580200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:52575400-52580400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr13:52575800-52578600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr13:52575800-52581800	Weak transcription	K562	blood
25	chr13:52576200-52577800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr13:52576400-52578800	Enhancers	Fetal Intestine Small	intestine
27	chr13:52576400-52581400	Enhancers	Stomach Mucosa	stomach
28	chr13:52576600-52579000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:52576800-52580400	Enhancers	Fetal Intestine Large	intestine
30	chr13:52577000-52578400	Enhancers	Small Intestine	intestine
31	chr13:52577000-52579800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr13:52577200-52579800	Enhancers	Duodenum Mucosa	Duodenum
33	chr13:52577600-52577800	Enhancers	Fetal Muscle Leg	muscle
34	chr13:52577600-52578000	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr13:52577600-52579400	Enhancers	Rectal Mucosa Donor 31	rectum

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