Variant report

Variant	rs9536035
Chromosome Location	chr13:52940243-52940244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs28589286	0.84[AMR][1000 genomes]
rs34355831	0.84[AMR][1000 genomes]
rs55850688	0.92[AMR][1000 genomes]
rs57412438	0.84[AMR][1000 genomes]
rs57831032	0.84[AMR][1000 genomes]
rs61011708	0.92[AMR][1000 genomes]
rs61171418	0.92[AMR][1000 genomes]
rs61677410	0.92[AMR][1000 genomes]
rs61957983	0.84[AMR][1000 genomes]
rs61957986	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs61957987	0.84[AMR][1000 genomes]
rs61957988	0.84[AMR][1000 genomes]
rs61957989	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs61958009	0.84[AMR][1000 genomes]
rs61958011	0.92[AMR][1000 genomes]
rs61958012	0.84[AMR][1000 genomes]
rs61958017	0.92[AMR][1000 genomes]
rs61958018	0.84[AMR][1000 genomes]
rs61958019	0.92[AMR][1000 genomes]
rs61958020	0.92[AMR][1000 genomes]
rs9526898	0.92[AMR][1000 genomes]
rs9526902	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9526903	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9526906	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9526909	0.84[AMR][1000 genomes]
rs9526910	0.92[AMR][1000 genomes]
rs9536025	0.84[AMR][1000 genomes]
rs9536026	0.84[AMR][1000 genomes]
rs9536028	0.92[AMR][1000 genomes]
rs9536029	0.84[AMR][1000 genomes]
rs9536034	0.84[AMR][1000 genomes]
rs9536037	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9536040	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9536044	0.85[AMR][1000 genomes]
rs9536047	0.84[AMR][1000 genomes]
rs9536049	0.84[AMR][1000 genomes]
rs9536050	0.92[AMR][1000 genomes]
rs9536051	0.92[AMR][1000 genomes]
rs9536053	0.84[AMR][1000 genomes]
rs9536056	0.84[AMR][1000 genomes]
rs9536057	0.92[AMR][1000 genomes]
rs9536060	0.92[AMR][1000 genomes]
rs9536061	0.92[AMR][1000 genomes]
rs9536062	0.84[AMR][1000 genomes]
rs9536064	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv977244	chr13:52936623-52940828	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536035	CKAP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52934000-52951800	Weak transcription	Fetal Intestine Small	intestine
2	chr13:52934400-52940400	Weak transcription	Fetal Lung	lung
3	chr13:52934600-52944800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:52934800-52940400	Weak transcription	Fetal Muscle Leg	muscle
5	chr13:52940200-52940800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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