Variant report

Variant	rs9536364
Chromosome Location	chr13:53717038-53717039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1322938	0.82[EUR][1000 genomes]
rs1322939	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1322941	0.94[ASN][1000 genomes]
rs1322942	0.94[ASN][1000 genomes]
rs1322943	0.94[ASN][1000 genomes]
rs1322944	0.94[ASN][1000 genomes]
rs1343602	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1407685	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1419218	0.93[ASN][1000 genomes]
rs1923767	0.94[ASN][1000 genomes]
rs1923768	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1951722	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2093598	0.94[ASN][1000 genomes]
rs2408766	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34699715	0.87[ASN][1000 genomes]
rs4886202	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886270	0.87[EUR][1000 genomes]
rs912054	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9527057	0.96[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9536355	0.87[ASN][1000 genomes]
rs9536358	0.94[ASN][1000 genomes]
rs9536359	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9536363	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9536378	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs9568807	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9568808	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568813	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9568826	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53711200-53717200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53713600-53719000	Weak transcription	Brain Germinal Matrix	brain
3	chr13:53714800-53719600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53715200-53719600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:53715600-53718000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:53715800-53718200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:53716000-53718400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:53716200-53717400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:53716200-53718000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:53716400-53718200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:53716600-53717200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:53716600-53718600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr13:53716800-53717400	Enhancers	HUES64 Cell Line	embryonic stem cell

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