Variant report

Variant	rs1322938
Chromosome Location	chr13:53731757-53731758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1322939	0.83[EUR][1000 genomes]
rs1322941	0.93[EUR][1000 genomes]
rs1322942	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1322943	0.94[EUR][1000 genomes]
rs1322944	0.94[EUR][1000 genomes]
rs1322949	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1322951	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1322952	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1322955	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1322956	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1322961	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1322962	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1343602	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1407685	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1419218	0.94[EUR][1000 genomes]
rs1853369	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1923767	0.94[EUR][1000 genomes]
rs1923768	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1923771	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1951722	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2015677	0.84[EUR][1000 genomes]
rs2038649	0.81[EUR][1000 genomes]
rs2093598	0.94[EUR][1000 genomes]
rs2093599	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2408766	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2759708	0.81[EUR][1000 genomes]
rs2759712	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2759716	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2806936	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806939	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2806941	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2806956	0.80[EUR][1000 genomes]
rs2806960	0.80[EUR][1000 genomes]
rs2806963	0.83[EUR][1000 genomes]
rs2806964	0.83[EUR][1000 genomes]
rs2806966	0.82[EUR][1000 genomes]
rs34699715	0.85[EUR][1000 genomes]
rs4886202	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7994915	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8002513	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs912052	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs912054	0.81[AMR][1000 genomes]
rs927518	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs9527057	0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs9536355	0.85[EUR][1000 genomes]
rs9536358	0.93[EUR][1000 genomes]
rs9536359	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9536363	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9536364	0.82[EUR][1000 genomes]
rs9536378	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs9568807	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9568813	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs959222	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links