Variant report

Variant	rs1322962
Chromosome Location	chr13:53745350-53745351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53744743..53746606-chr13:53747256..53749261,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1016829	0.86[ASN][1000 genomes]
rs1322938	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1322941	0.88[EUR][1000 genomes]
rs1322942	0.89[EUR][1000 genomes]
rs1322943	0.89[EUR][1000 genomes]
rs1322944	0.89[EUR][1000 genomes]
rs1322949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1322951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1322952	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1322955	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1322956	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1322961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1343602	0.88[EUR][1000 genomes]
rs1407685	0.89[EUR][1000 genomes]
rs1419218	0.89[EUR][1000 genomes]
rs1853369	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1909648	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1923767	0.89[EUR][1000 genomes]
rs1923768	0.89[EUR][1000 genomes]
rs1923771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1951722	0.87[EUR][1000 genomes]
rs2015677	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2038649	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2093598	0.89[EUR][1000 genomes]
rs2093599	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2408766	0.89[EUR][1000 genomes]
rs2491124	0.86[ASN][1000 genomes]
rs2759675	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2759706	0.86[ASN][1000 genomes]
rs2759708	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2759709	0.84[EUR][1000 genomes]
rs2759712	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2759716	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806936	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2806939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2806941	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2806956	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2806960	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2806963	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2806964	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2806966	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34699715	0.80[EUR][1000 genomes]
rs4886202	0.90[EUR][1000 genomes]
rs4886270	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7984963	0.84[ASN][1000 genomes]
rs7994915	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8002513	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs912052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs912054	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs927518	0.80[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9527057	1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9536355	0.80[EUR][1000 genomes]
rs9536358	0.88[EUR][1000 genomes]
rs9536359	0.90[EUR][1000 genomes]
rs9536363	0.92[EUR][1000 genomes]
rs9536378	1.00[CHB][hapmap]
rs9568807	0.87[EUR][1000 genomes]
rs9568813	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568826	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs959222	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53742200-53745400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:53743000-53746000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:53743400-53745600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:53744800-53745600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:53745000-53745400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:53745000-53745400	Enhancers	Brain Germinal Matrix	brain
7	chr13:53745000-53745800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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