Variant report

Variant	rs7984963
Chromosome Location	chr13:53812390-53812391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1016829	0.96[ASN][1000 genomes]
rs1322949	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs1322951	0.82[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs1322952	0.88[ASN][1000 genomes]
rs1322955	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1322956	0.90[ASN][1000 genomes]
rs1322958	0.83[ASN][1000 genomes]
rs1322961	0.87[ASN][1000 genomes]
rs1322962	0.84[ASN][1000 genomes]
rs1407686	0.91[ASN][1000 genomes]
rs1853369	0.88[ASN][1000 genomes]
rs1909648	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923771	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs2015677	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2038649	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2491124	0.96[ASN][1000 genomes]
rs2759675	0.88[EUR][1000 genomes]
rs2759706	0.96[ASN][1000 genomes]
rs2759708	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2759709	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2759712	0.90[ASN][1000 genomes]
rs2759716	0.84[ASN][1000 genomes]
rs2806936	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2806939	0.84[ASN][1000 genomes]
rs2806941	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2806956	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2806960	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2806963	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806964	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806966	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4886270	0.90[ASN][1000 genomes]
rs4886312	0.83[EUR][1000 genomes]
rs5008125	0.80[EUR][1000 genomes]
rs7994915	0.88[ASN][1000 genomes]
rs8002513	0.83[ASN][1000 genomes]
rs912052	0.90[ASN][1000 genomes]
rs912054	0.80[ASN][1000 genomes]
rs927518	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9527057	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs9536378	1.00[CHB][hapmap];0.86[CHD][hapmap]
rs9568813	0.80[ASN][1000 genomes]
rs9568826	0.83[ASN][1000 genomes]
rs959222	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53811800-53812600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr13:53812000-53812400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:53812000-53812600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53812000-53812800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:53812000-53812800	Enhancers	Esophagus	oesophagus
6	chr13:53812000-53813000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:53812200-53812600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:53812200-53813000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:53812200-53813000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:53812200-53813200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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