Variant report

Variant	rs5008125
Chromosome Location	chr13:53813933-53813934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12860317	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs1322937	0.86[ASN][1000 genomes]
rs1322948	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1322953	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1322954	0.82[EUR][1000 genomes]
rs1322959	0.86[ASN][1000 genomes]
rs1322960	0.82[EUR][1000 genomes]
rs13353100	0.94[ASN][1000 genomes]
rs1343603	0.80[EUR][1000 genomes]
rs1407688	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1407689	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1885767	0.81[EUR][1000 genomes]
rs1909650	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1923770	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1923772	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1951724	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1951725	0.81[EUR][1000 genomes]
rs2004422	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2038647	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2038648	0.80[ASN][1000 genomes]
rs2759674	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2759713	0.82[EUR][1000 genomes]
rs2759714	0.82[EUR][1000 genomes]
rs2806937	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806940	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806947	0.82[EUR][1000 genomes]
rs2806965	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2806968	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2806994	0.83[EUR][1000 genomes]
rs4886312	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71430868	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7984963	0.80[EUR][1000 genomes]
rs9536375	0.94[ASN][1000 genomes]
rs9536379	0.86[ASN][1000 genomes]
rs9596771	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53812600-53814400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:53812600-53816200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53812800-53814600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53812800-53814800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:53813000-53814800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:53813000-53814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:53813000-53814800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:53813000-53816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:53813200-53814800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:53813800-53814400	Enhancers	Fetal Brain Female	brain

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