Variant report

Variant	rs1951725
Chromosome Location	chr13:53745568-53745569
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53744743..53746606-chr13:53747256..53749261,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1322948	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1322953	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1322954	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1322955	0.81[EUR][1000 genomes]
rs1322960	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1407688	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1407689	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1885767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923772	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1923773	0.80[ASN][1000 genomes]
rs1951724	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2004422	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2038647	0.85[EUR][1000 genomes]
rs2181389	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2759674	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2759694	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2759698	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2759700	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2759713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2759714	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2806936	0.82[EUR][1000 genomes]
rs2806937	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806940	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806941	0.82[EUR][1000 genomes]
rs2806947	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806965	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2806968	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806994	0.80[EUR][1000 genomes]
rs4886312	0.84[EUR][1000 genomes]
rs5008125	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53743000-53746000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:53743400-53745600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:53744800-53745600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:53745000-53745800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:53745400-53745600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:53745400-53750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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