Variant report

Variant	rs1322953
Chromosome Location	chr13:53769788-53769789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53768534..53770732-chr13:53773840..53775697,2	K562	blood:

Variant related genes	Relation type
ENSG00000225510	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12860317	0.90[ASN][1000 genomes]
rs1322937	0.83[ASN][1000 genomes]
rs1322948	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1322954	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1322959	0.83[ASN][1000 genomes]
rs1322960	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13353100	0.90[ASN][1000 genomes]
rs1343603	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1407688	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1407689	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1885767	0.87[EUR][1000 genomes]
rs1909650	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1923770	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1923772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951724	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1951725	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2004422	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2038647	0.81[EUR][1000 genomes]
rs2759674	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2759713	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2759714	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2806937	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2806940	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2806947	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2806965	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806968	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806985	0.84[EUR][1000 genomes]
rs2806994	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4886312	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs5008125	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71430868	0.90[ASN][1000 genomes]
rs9536375	0.90[ASN][1000 genomes]
rs9536379	0.83[ASN][1000 genomes]
rs9596771	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53766000-53771400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr13:53766200-53770800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53766400-53774200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:53766600-53770400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:53766600-53770800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:53767400-53770400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:53767400-53771800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:53767400-53772000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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