Variant report

Variant	rs2759674
Chromosome Location	chr13:53738240-53738241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1322948	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1322953	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1322954	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1322960	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1343603	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1407688	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1407689	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1885767	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1909650	0.83[EUR][1000 genomes]
rs1923770	0.84[EUR][1000 genomes]
rs1923772	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1923773	0.96[ASN][1000 genomes]
rs1951724	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1951725	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2004422	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2038647	0.80[EUR][1000 genomes]
rs2759675	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2759713	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2759714	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2806937	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2806940	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2806947	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806965	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2806968	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806985	0.86[EUR][1000 genomes]
rs2806994	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4886312	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5008125	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain
2	chr13:53734000-53739000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:53734200-53739000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:53735000-53741800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:53735800-53739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:53736000-53738800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:53736200-53739200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:53738200-53740200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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