Variant report

Variant	rs2759675
Chromosome Location	chr13:53737901-53737902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1322949	0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs1322951	0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1322952	0.81[EUR][1000 genomes]
rs1322955	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1322956	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1322961	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1322962	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1407686	0.81[ASN][1000 genomes]
rs1853369	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1909648	0.83[EUR][1000 genomes]
rs1923771	0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs1923772	0.81[EUR][1000 genomes]
rs2015677	0.87[EUR][1000 genomes]
rs2038649	0.84[EUR][1000 genomes]
rs2093599	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2759674	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2759708	0.84[EUR][1000 genomes]
rs2759709	0.82[EUR][1000 genomes]
rs2759712	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2759716	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2806936	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2806937	0.81[EUR][1000 genomes]
rs2806939	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2806940	0.81[EUR][1000 genomes]
rs2806941	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806956	0.83[EUR][1000 genomes]
rs2806960	0.83[EUR][1000 genomes]
rs2806963	0.86[EUR][1000 genomes]
rs2806964	0.86[EUR][1000 genomes]
rs2806966	0.85[EUR][1000 genomes]
rs7984963	0.88[EUR][1000 genomes]
rs7994915	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8002513	0.82[EUR][1000 genomes]
rs912052	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs912054	0.81[ASN][1000 genomes]
rs927518	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs9527057	0.91[CHB][hapmap]
rs9536378	0.90[CHB][hapmap]
rs9568813	0.83[ASN][1000 genomes]
rs959222	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53731400-53741800	Weak transcription	Fetal Brain Male	brain
2	chr13:53734000-53739000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:53734200-53739000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:53735000-53741800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:53735800-53739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:53736000-53738800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:53736200-53739200	Weak transcription	Placenta Amnion	Placenta Amnion

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