Variant report

Variant	rs912052
Chromosome Location	chr13:53765203-53765204
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1016829	0.94[ASN][1000 genomes]
rs1322938	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1322941	0.87[EUR][1000 genomes]
rs1322942	0.88[EUR][1000 genomes]
rs1322943	0.88[EUR][1000 genomes]
rs1322944	0.88[EUR][1000 genomes]
rs1322949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1322951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322952	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1322955	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1322962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1343602	0.87[EUR][1000 genomes]
rs1407685	0.88[EUR][1000 genomes]
rs1407686	0.81[ASN][1000 genomes]
rs1419218	0.88[EUR][1000 genomes]
rs1853369	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1909648	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1923767	0.88[EUR][1000 genomes]
rs1923768	0.88[EUR][1000 genomes]
rs1923771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1951722	0.86[EUR][1000 genomes]
rs2015677	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2038649	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2093598	0.88[EUR][1000 genomes]
rs2093599	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2408766	0.88[EUR][1000 genomes]
rs2491124	0.94[ASN][1000 genomes]
rs2759675	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2759706	0.94[ASN][1000 genomes]
rs2759708	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2759709	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2759712	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759716	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2806936	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806941	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2806956	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806960	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806963	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806964	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2806966	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4886202	0.89[EUR][1000 genomes]
rs4886270	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7984963	0.90[ASN][1000 genomes]
rs7994915	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8002513	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs912054	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs927518	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9527057	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9536358	0.87[EUR][1000 genomes]
rs9536359	0.89[EUR][1000 genomes]
rs9536363	0.91[EUR][1000 genomes]
rs9536378	1.00[CHB][hapmap]
rs9568807	0.86[EUR][1000 genomes]
rs9568813	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568826	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs959222	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53762600-53767400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:53763400-53767400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr13:53763600-53765600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:53763800-53766600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:53764000-53766000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:53764000-53767400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:53764200-53765400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:53764200-53766400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:53764400-53766200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:53764800-53765800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:53764800-53766000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:53764800-53766200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:53765000-53765400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr13:53765000-53765400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr13:53765000-53765400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr13:53765200-53765600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:53765200-53765800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr13:53765200-53765800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:53765200-53766000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:53765200-53766000	Enhancers	NHEK	skin

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