Variant report

Variant	rs1407686
Chromosome Location	chr13:53813901-53813902
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1016829	0.87[ASN][1000 genomes]
rs1322949	0.83[ASN][1000 genomes]
rs1322951	0.81[ASN][1000 genomes]
rs1322955	0.81[ASN][1000 genomes]
rs1322956	0.81[ASN][1000 genomes]
rs1322958	0.80[EUR][1000 genomes]
rs1909648	0.86[ASN][1000 genomes]
rs1923771	0.84[ASN][1000 genomes]
rs2015677	0.83[ASN][1000 genomes]
rs2038649	0.85[ASN][1000 genomes]
rs2491124	0.87[ASN][1000 genomes]
rs2759675	0.81[ASN][1000 genomes]
rs2759706	0.87[ASN][1000 genomes]
rs2759708	0.82[ASN][1000 genomes]
rs2759712	0.81[ASN][1000 genomes]
rs2806956	0.87[ASN][1000 genomes]
rs2806960	0.87[ASN][1000 genomes]
rs2806963	0.85[ASN][1000 genomes]
rs2806964	0.85[ASN][1000 genomes]
rs2806966	0.85[ASN][1000 genomes]
rs4886270	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7318473	0.81[EUR][1000 genomes]
rs7984963	0.91[ASN][1000 genomes]
rs912052	0.81[ASN][1000 genomes]
rs927518	0.87[ASN][1000 genomes]
rs9527057	0.82[EUR][1000 genomes]
rs9536378	0.80[EUR][1000 genomes]
rs959222	0.87[ASN][1000 genomes]
rs980186	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53812600-53814400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:53812600-53816200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53812800-53814600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53812800-53814800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:53813000-53814800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:53813000-53814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:53813000-53814800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:53813000-53816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:53813200-53814800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:53813800-53814400	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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