Variant report

Variant	rs1322958
Chromosome Location	chr13:53834974-53834975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1016829	0.80[ASN][1000 genomes]
rs1322949	1.00[CHB][hapmap]
rs1322951	1.00[CHB][hapmap]
rs1407686	0.80[EUR][1000 genomes]
rs1923771	1.00[CHB][hapmap]
rs2491124	0.80[ASN][1000 genomes]
rs2759706	0.80[ASN][1000 genomes]
rs2806956	0.80[ASN][1000 genomes]
rs2806960	0.80[ASN][1000 genomes]
rs4886270	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7318473	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7984963	0.83[ASN][1000 genomes]
rs927518	0.96[CHB][hapmap];0.80[ASN][1000 genomes]
rs9527057	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9536378	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs959222	0.80[ASN][1000 genomes]
rs980186	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53834200-53835400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:53834600-53836000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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