Variant report

Variant	rs2806985
Chromosome Location	chr13:53677723-53677724
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1322948	0.82[EUR][1000 genomes]
rs1322953	0.84[EUR][1000 genomes]
rs1343603	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1343612	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1407688	0.81[EUR][1000 genomes]
rs1407689	0.81[EUR][1000 genomes]
rs1909650	0.81[CEU][hapmap]
rs1923772	0.86[EUR][1000 genomes]
rs1951724	0.80[EUR][1000 genomes]
rs2004422	0.83[EUR][1000 genomes]
rs2181389	0.83[EUR][1000 genomes]
rs2759674	0.86[EUR][1000 genomes]
rs2759694	0.84[EUR][1000 genomes]
rs2759698	0.84[EUR][1000 genomes]
rs2759700	0.86[EUR][1000 genomes]
rs2806937	0.86[EUR][1000 genomes]
rs2806940	0.86[EUR][1000 genomes]
rs2806965	0.83[EUR][1000 genomes]
rs2806982	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2806994	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53675400-53679400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53675400-53680000	Weak transcription	Pancreas	Pancrea
3	chr13:53675800-53677800	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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