Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1322954	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1322960	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1343603	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1343610	0.85[ASN][1000 genomes]
rs1419216	0.81[ASN][1000 genomes]
rs1885767	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1936385	0.84[ASN][1000 genomes]
rs1951725	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2181389	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246208	0.81[ASN][1000 genomes]
rs2759698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759700	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2759713	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2759714	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2806947	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2806971	0.83[ASN][1000 genomes]
rs2806974	0.84[ASN][1000 genomes]
rs2806978	0.85[ASN][1000 genomes]
rs2806985	0.84[EUR][1000 genomes]
rs2806994	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53694200-53695600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:53694400-53696800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:53694600-53695400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:53694600-53696400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr13:53694800-53695400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:53694800-53696400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:53694800-53696400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:53694800-53696400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr13:53694800-53696600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:53695000-53695600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:53695000-53695600	Enhancers	Fetal Muscle Leg	muscle
12	chr13:53695000-53695800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr13:53695000-53695800	Enhancers	Fetal Stomach	stomach
14	chr13:53695000-53696400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:53695000-53696400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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