Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1343605	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1343607	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1343610	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343612	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1936385	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246208	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759694	0.81[ASN][1000 genomes]
rs2759698	0.81[ASN][1000 genomes]
rs2759700	0.80[ASN][1000 genomes]
rs2806933	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2806946	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2806949	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2806950	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2806971	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2806974	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806978	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2806980	0.87[AFR][1000 genomes]
rs2806981	0.90[AFR][1000 genomes]
rs2806982	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66582931	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53639200-53654800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr13:53650000-53652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53650000-53653400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:53651000-53656200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr13:53651200-53653600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: