Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1343605	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1343607	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1343611	0.83[TSI][hapmap]
rs1343612	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1419216	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1936385	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2181389	0.83[ASN][1000 genomes]
rs2246208	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2759694	0.85[ASN][1000 genomes]
rs2759698	0.85[ASN][1000 genomes]
rs2759700	0.84[ASN][1000 genomes]
rs2806933	0.85[EUR][1000 genomes]
rs2806946	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2806949	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2806950	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2806971	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806974	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2806978	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806980	0.93[AFR][1000 genomes]
rs2806981	0.93[AFR][1000 genomes]
rs2806982	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4886119	0.83[TSI][hapmap]
rs66582931	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1343610	KCNRG	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53658600-53666000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:53662400-53663600	Enhancers	Brain Cingulate Gyrus	brain
3	chr13:53662600-53663200	Enhancers	Brain Hippocampus Middle	brain

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