Variant report
| Variant | rs2759698 |
|---|---|
| Chromosome Location | chr13:53687653-53687654 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:53685373..53687823-chr13:53688675..53690825,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1322954 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1322960 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1343603 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1343610 | 0.85[ASN][1000 genomes] |
| rs1419216 | 0.81[ASN][1000 genomes] |
| rs1885767 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1936385 | 0.84[ASN][1000 genomes] |
| rs1951725 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2181389 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2246208 | 0.81[ASN][1000 genomes] |
| rs2759694 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2759700 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2759713 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2759714 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2806947 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2806971 | 0.83[ASN][1000 genomes] |
| rs2806974 | 0.84[ASN][1000 genomes] |
| rs2806978 | 0.85[ASN][1000 genomes] |
| rs2806985 | 0.84[EUR][1000 genomes] |
| rs2806994 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:53681800-53695000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
