Variant report
Variant | rs2038647 |
---|---|
Chromosome Location | chr13:53842904-53842905 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12860317 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
rs1322937 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1322948 | 0.83[EUR][1000 genomes] |
rs1322953 | 0.81[EUR][1000 genomes] |
rs1322954 | 0.86[EUR][1000 genomes] |
rs1322959 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1322960 | 0.85[EUR][1000 genomes] |
rs13353100 | 0.84[ASN][1000 genomes] |
rs1407688 | 0.81[EUR][1000 genomes] |
rs1407689 | 0.81[EUR][1000 genomes] |
rs1885767 | 0.85[EUR][1000 genomes] |
rs1909650 | 1.00[CHB][hapmap] |
rs1923772 | 0.81[EUR][1000 genomes] |
rs1951724 | 0.81[EUR][1000 genomes] |
rs1951725 | 0.85[EUR][1000 genomes] |
rs2004422 | 0.84[EUR][1000 genomes] |
rs2759674 | 0.80[EUR][1000 genomes] |
rs2759713 | 0.86[EUR][1000 genomes] |
rs2759714 | 0.86[EUR][1000 genomes] |
rs2806937 | 0.81[EUR][1000 genomes] |
rs2806940 | 0.81[EUR][1000 genomes] |
rs2806947 | 0.86[EUR][1000 genomes] |
rs2806965 | 0.84[EUR][1000 genomes] |
rs4886312 | 0.86[EUR][1000 genomes] |
rs5008125 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs71430868 | 0.84[ASN][1000 genomes] |
rs9536375 | 0.84[ASN][1000 genomes] |
rs9536379 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs9596771 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv2756368 | chr13:53824599-53923599 | Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:53836000-53843800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |