Variant report

Variant	rs1923770
Chromosome Location	chr13:53786568-53786569
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12860317	1.00[CHB][hapmap]
rs1322948	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1322953	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1322954	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1407688	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1407689	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909648	0.80[EUR][1000 genomes]
rs1909650	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923772	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1951724	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2004422	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2015677	0.80[EUR][1000 genomes]
rs2038648	1.00[ASN][1000 genomes]
rs2038649	0.82[EUR][1000 genomes]
rs2759674	0.84[EUR][1000 genomes]
rs2759713	0.80[EUR][1000 genomes]
rs2759714	0.80[EUR][1000 genomes]
rs2806937	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806940	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2806947	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2806956	0.82[EUR][1000 genomes]
rs2806960	0.83[EUR][1000 genomes]
rs2806963	0.80[EUR][1000 genomes]
rs2806964	0.80[EUR][1000 genomes]
rs2806965	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2806968	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886312	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5008125	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs927518	0.82[EUR][1000 genomes]
rs959222	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1840677	chr13:53774627-53791895	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53786400-53788400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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