Variant report

Variant	rs9536918
Chromosome Location	chr13:55521444-55521445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11148318	0.82[AFR][1000 genomes]
rs263826	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs263827	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs263830	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs431078	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4885521	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs931016	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv528493	chr13:55438905-55602402	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55519200-55535600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:55520200-55521600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:55520800-55522200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:55521000-55522000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:55521400-55521600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:55521400-55521800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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