Variant report

Variant	rs263827
Chromosome Location	chr13:55551979-55551980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12585613	0.83[AMR][1000 genomes]
rs1993777	0.81[AFR][1000 genomes]
rs263826	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs431078	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4885521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6561807	0.82[AFR][1000 genomes]
rs73494676	0.83[AMR][1000 genomes]
rs931016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9536915	0.83[AMR][1000 genomes]
rs9536918	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs972289	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv528493	chr13:55438905-55602402	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv916484	chr13:55528644-55979043	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55550200-55553400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:55551200-55552000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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