Variant report

Variant	rs972289
Chromosome Location	chr13:55460280-55460281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10459380	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1954258	0.81[CHB][hapmap]
rs263826	0.85[AFR][1000 genomes]
rs263827	0.84[AFR][1000 genomes]
rs263830	0.84[AFR][1000 genomes]
rs28517522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431078	0.85[AFR][1000 genomes]
rs4463972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885521	0.88[AFR][1000 genomes]
rs6561807	0.81[AFR][1000 genomes]
rs931016	0.88[AFR][1000 genomes]
rs9563258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563264	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9569106	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9569137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9569139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9569140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9569141	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9569142	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9569143	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9569146	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9569147	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9569148	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9634860	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1048599	chr13:55143426-55476042	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1051640	chr13:55143426-55478547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561703	chr13:55143754-55473732	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900096	chr13:55363417-55508485	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv528493	chr13:55438905-55602402	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55456800-55465600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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