Variant report

Variant	rs9544014
Chromosome Location	chr13:76229698-76229699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs41286114	1.00[ASN][1000 genomes]
rs55677829	1.00[ASN][1000 genomes]
rs73225951	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76211600-76232800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr13:76211600-76235600	Weak transcription	Ovary	ovary
3	chr13:76211600-76235600	Weak transcription	Pancreas	Pancrea
4	chr13:76211800-76230000	Weak transcription	Thymus	Thymus
5	chr13:76212200-76235600	Weak transcription	Aorta	Aorta
6	chr13:76212400-76230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:76212400-76240400	Weak transcription	HMEC	breast
8	chr13:76213400-76267800	Weak transcription	Primary T cells from cord blood	blood
9	chr13:76213800-76235600	Weak transcription	Psoas Muscle	Psoas
10	chr13:76215400-76258200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:76222000-76230000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:76223000-76233200	Weak transcription	Primary B cells from cord blood	blood
13	chr13:76223200-76230800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:76223200-76236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr13:76223400-76230800	Weak transcription	HSMMtube	muscle
16	chr13:76223800-76230200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:76224600-76232400	Genic enhancers	Osteobl	bone
18	chr13:76227000-76230000	Strong transcription	NH-A	brain
19	chr13:76227400-76230000	Strong transcription	HSMM	muscle
20	chr13:76227800-76230000	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr13:76228200-76231600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr13:76228400-76230000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr13:76228800-76230000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:76229000-76230000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:76229000-76230000	Weak transcription	NHDF-Ad	bronchial
26	chr13:76229000-76230200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr13:76229200-76230000	Strong transcription	NHLF	lung
28	chr13:76229400-76230000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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