Variant report

Variant	rs55677829
Chromosome Location	chr13:76280179-76280180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76279169..76281047-chr13:76286022..76288231,2	MCF-7	breast:
2	chr13:76278744..76281053-chr13:76282794..76285725,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11843392	0.83[EUR][1000 genomes]
rs13378926	0.96[EUR][1000 genomes]
rs13378927	0.96[EUR][1000 genomes]
rs1570553	0.96[EUR][1000 genomes]
rs1570554	0.96[EUR][1000 genomes]
rs17064886	0.96[EUR][1000 genomes]
rs28634531	0.96[EUR][1000 genomes]
rs41286114	1.00[ASN][1000 genomes]
rs4497537	0.96[EUR][1000 genomes]
rs55634270	0.96[EUR][1000 genomes]
rs55912229	0.96[EUR][1000 genomes]
rs56312330	0.96[EUR][1000 genomes]
rs73225936	0.96[EUR][1000 genomes]
rs73225937	0.96[EUR][1000 genomes]
rs73225945	0.96[EUR][1000 genomes]
rs73225951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225954	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73225961	0.96[EUR][1000 genomes]
rs73229913	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73231807	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7331067	0.96[EUR][1000 genomes]
rs7986928	0.96[EUR][1000 genomes]
rs8000108	0.96[EUR][1000 genomes]
rs8000374	0.96[EUR][1000 genomes]
rs8000663	0.96[EUR][1000 genomes]
rs9318366	0.96[EUR][1000 genomes]
rs9318367	0.96[EUR][1000 genomes]
rs9318369	0.96[EUR][1000 genomes]
rs9318370	0.96[EUR][1000 genomes]
rs9318371	0.96[EUR][1000 genomes]
rs9544014	1.00[ASN][1000 genomes]
rs9565182	0.96[EUR][1000 genomes]
rs9565183	0.96[EUR][1000 genomes]
rs9565184	0.96[EUR][1000 genomes]
rs9565185	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9565187	0.96[EUR][1000 genomes]
rs9565190	0.96[EUR][1000 genomes]
rs9573613	0.96[EUR][1000 genomes]
rs9573614	0.83[EUR][1000 genomes]
rs9573615	0.96[EUR][1000 genomes]
rs9573616	0.96[EUR][1000 genomes]
rs9573617	0.86[EUR][1000 genomes]
rs9573619	0.96[EUR][1000 genomes]
rs9573620	0.96[EUR][1000 genomes]
rs9573621	0.89[EUR][1000 genomes]
rs9573622	0.96[EUR][1000 genomes]
rs9573623	0.96[EUR][1000 genomes]
rs9573624	0.96[EUR][1000 genomes]
rs9573625	0.96[EUR][1000 genomes]
rs9573626	0.96[EUR][1000 genomes]
rs9573628	0.96[EUR][1000 genomes]
rs9573629	0.96[EUR][1000 genomes]
rs9573630	0.96[EUR][1000 genomes]
rs9593119	0.96[EUR][1000 genomes]
rs9593122	0.96[EUR][1000 genomes]
rs9600530	0.89[EUR][1000 genomes]
rs9600531	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76259600-76294400	Weak transcription	Ovary	ovary
2	chr13:76259800-76282200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:76271400-76286000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:76274600-76280400	Genic enhancers	Osteobl	bone
5	chr13:76275800-76281600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:76276600-76281000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:76277200-76280400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:76277200-76280600	Enhancers	NHLF	lung
9	chr13:76277400-76280600	Enhancers	NHDF-Ad	bronchial
10	chr13:76277600-76280400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr13:76277800-76280400	Enhancers	Fetal Lung	lung
12	chr13:76278200-76280400	Enhancers	Small Intestine	intestine
13	chr13:76278400-76280600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr13:76278600-76280200	Enhancers	Fetal Intestine Large	intestine
15	chr13:76278600-76280400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr13:76278600-76280400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:76278600-76280600	Enhancers	HUVEC	blood vessel
18	chr13:76278600-76280800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:76278600-76280800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:76278800-76280200	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr13:76278800-76280200	Flanking Active TSS	NHEK	skin
22	chr13:76279000-76280400	Flanking Active TSS	A549	lung
23	chr13:76279400-76280400	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr13:76279400-76280400	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr13:76279400-76280600	Enhancers	HSMMtube	muscle
26	chr13:76279400-76280600	Enhancers	NH-A	brain
27	chr13:76279400-76282000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr13:76279400-76282400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr13:76279400-76286400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:76279400-76288600	Weak transcription	Psoas Muscle	Psoas
31	chr13:76279400-76308000	Weak transcription	Left Ventricle	heart
32	chr13:76279600-76280400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr13:76279600-76280400	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr13:76279600-76280400	Enhancers	Stomach Mucosa	stomach
35	chr13:76279600-76280600	Enhancers	HMEC	breast
36	chr13:76279800-76282200	Genic enhancers	HSMM	muscle
37	chr13:76280000-76280400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr13:76280000-76280400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr13:76280000-76280400	Enhancers	Duodenum Mucosa	Duodenum
40	chr13:76280000-76280400	Enhancers	Pancreas	Pancrea
41	chr13:76280000-76280400	Flanking Active TSS	Hela-S3	cervix
42	chr13:76280000-76280600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr13:76280000-76280600	Enhancers	Placenta	Placenta

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