Variant report

Variant	rs9565184
Chromosome Location	chr13:76265455-76265456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr13:76265328-76265709	T-47D	breast:	n/a	n/a
2	FOXM1	chr13:76265235-76265756	MCF-7	breast:	n/a	n/a
3	FOS	chr13:76265336-76265468	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr13:76265365-76265489	MCF10A-Er-Src	breast:	n/a	n/a
5	EP300	chr13:76265136-76265756	A549	lung:	n/a	chr13:76265536-76265546 chr13:76265556-76265566
6	TCF12	chr13:76265113-76265887	A549	lung:	n/a	n/a
7	CEBPB	chr13:76265386-76265725	MCF-7	breast:	n/a	n/a
8	FOXM1	chr13:76265349-76265706	MCF-7	breast:	n/a	n/a
9	GATA3	chr13:76265012-76265877	A549	lung:	n/a	n/a
10	BCL3	chr13:76265186-76265752	A549	lung:	n/a	n/a
11	FOSL2	chr13:76265296-76265693	MCF-7	breast:	n/a	n/a
12	SP1	chr13:76265117-76265862	A549	lung:	n/a	n/a
13	EP300	chr13:76265064-76265863	A549	lung:	n/a	chr13:76265536-76265546 chr13:76265556-76265566
14	GATA3	chr13:76265291-76265744	MCF-7	breast:	n/a	n/a
15	USF1	chr13:76265328-76265695	A549	lung:	n/a	n/a
16	RCOR1	chr13:76265206-76266125	IMR90	lung:	n/a	n/a
17	FOXA2	chr13:76265119-76265755	A549	lung:	n/a	n/a
18	TCF12	chr13:76265187-76265680	A549	lung:	n/a	n/a
19	JUND	chr13:76265242-76265732	A549	lung:	n/a	n/a
20	JUND	chr13:76265436-76265762	A549	lung:	n/a	n/a
21	STAT3	chr13:76265299-76265662	Hela-S3	cervix:	n/a	n/a
22	GABPA	chr13:76265298-76265623	A549	lung:	n/a	n/a
23	EP300	chr13:76265313-76265595	Hela-S3	cervix:	n/a	chr13:76265536-76265546 chr13:76265556-76265566
24	GATA3	chr13:76265319-76265825	MCF-7	breast:	n/a	n/a
25	FOXA2	chr13:76265254-76265883	A549	lung:	n/a	n/a
26	CEBPB	chr13:76265445-76265730	IMR90	lung:	n/a	n/a
27	CEBPB	chr13:76265329-76265765	Hela-S3	cervix:	n/a	n/a
28	SP1	chr13:76265171-76265844	A549	lung:	n/a	n/a
29	REST	chr13:76265252-76265766	A549	lung:	n/a	n/a
30	EP300	chr13:76265306-76265705	T-47D	breast:	n/a	chr13:76265536-76265546 chr13:76265556-76265566
31	FOSL2	chr13:76265229-76265588	A549	lung:	n/a	n/a
32	FOXA1	chr13:76265347-76265684	T-47D	breast:	n/a	chr13:76265535-76265550
33	GATA3	chr13:76265192-76265835	A549	lung:	n/a	n/a
34	EP300	chr13:76265339-76265621	T-47D	breast:	n/a	chr13:76265536-76265546 chr13:76265556-76265566
35	ATF3	chr13:76265207-76265684	A549	lung:	n/a	n/a
36	FOSL2	chr13:76265121-76265811	A549	lung:	n/a	n/a
37	MAX	chr13:76265241-76265809	A549	lung:	n/a	chr13:76265615-76265624
38	TEAD4	chr13:76265134-76265646	A549	lung:	n/a	n/a
39	FOXA1	chr13:76265319-76265638	T-47D	breast:	n/a	chr13:76265535-76265550
40	CEBPB	chr13:76265245-76265745	A549	lung:	n/a	n/a
41	MAX	chr13:76265198-76265834	A549	lung:	n/a	chr13:76265615-76265624
42	CHD2	chr13:76265452-76265748	Hela-S3	cervix:	n/a	n/a
43	FOS	chr13:76265369-76265473	MCF10A-Er-Src	breast:	n/a	n/a
44	CEBPB	chr13:76265347-76265735	A549	lung:	n/a	n/a
45	CEBPB	chr13:76265307-76265709	A549	lung:	n/a	n/a
46	MXI1	chr13:76265323-76265906	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
FAM204CP	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11843392	0.87[EUR][1000 genomes]
rs13378446	1.00[ASN][1000 genomes]
rs13378926	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17064886	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4497537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55634270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55677829	0.96[EUR][1000 genomes]
rs55912229	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56312330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59605282	0.83[ASN][1000 genomes]
rs73225936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225937	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225945	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225951	0.96[EUR][1000 genomes]
rs73225954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991060	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8000663	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9318366	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9318367	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9318369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9318370	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9318371	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9544031	1.00[ASN][1000 genomes]
rs9565182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573614	0.87[EUR][1000 genomes]
rs9573615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573616	0.85[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573621	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573625	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573631	0.83[ASN][1000 genomes]
rs9593119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9593122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9600530	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9600531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76213400-76267800	Weak transcription	Primary T cells from cord blood	blood
2	chr13:76236800-76267600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:76259400-76273400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:76259600-76269800	Weak transcription	Fetal Heart	heart
5	chr13:76259600-76294400	Weak transcription	Ovary	ovary
6	chr13:76259800-76274600	Weak transcription	Aorta	Aorta
7	chr13:76259800-76282200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:76260000-76271000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:76260200-76268800	Weak transcription	HMEC	breast
10	chr13:76260400-76279200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:76261000-76277600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr13:76261400-76267000	Weak transcription	HSMMtube	muscle
13	chr13:76262400-76278600	Weak transcription	Pancreas	Pancrea
14	chr13:76262600-76272000	Genic enhancers	Osteobl	bone
15	chr13:76263000-76265800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:76263400-76265800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr13:76263400-76266600	Genic enhancers	Muscle Satellite Cultured Cells	--
18	chr13:76264000-76267200	Weak transcription	Fetal Stomach	stomach
19	chr13:76264600-76265800	Enhancers	NHDF-Ad	bronchial
20	chr13:76264600-76266400	Enhancers	Stomach Mucosa	stomach
21	chr13:76264600-76266600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr13:76264600-76266800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:76264800-76265800	Enhancers	NH-A	brain
24	chr13:76264800-76266400	Enhancers	Hela-S3	cervix
25	chr13:76264800-76266800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:76265000-76265600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:76265200-76266200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:76265200-76266200	Enhancers	NHLF	lung
29	chr13:76265400-76265600	Enhancers	A549	lung
30	chr13:76265400-76265800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr13:76265400-76265800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr13:76265400-76265800	Genic enhancers	HSMM	muscle
33	chr13:76265400-76266000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr13:76265400-76269000	Enhancers	Fetal Brain Male	brain

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