Variant report

Variant	rs9548379
Chromosome Location	chr13:39093040-39093041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10507473	0.87[EUR][1000 genomes]
rs2323932	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34903169	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9532246	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9532249	0.85[EUR][1000 genomes]
rs9548376	0.84[EUR][1000 genomes]
rs9548377	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9548380	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9548381	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9548382	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576558	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9635094	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39079600-39093400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:39086800-39094000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:39088400-39101200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:39092200-39093200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:39092400-39093200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr13:39092400-39093200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:39092400-39093200	Enhancers	Fetal Intestine Small	intestine
8	chr13:39092400-39094200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:39092400-39095000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:39092600-39093200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:39092800-39093800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:39092800-39094400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:39093000-39093400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:39093000-39093400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr13:39093000-39093800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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