Variant report

Variant	rs9548381
Chromosome Location	chr13:39095999-39096000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10507473	0.88[EUR][1000 genomes]
rs2323932	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34903169	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9532246	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9532249	0.82[EUR][1000 genomes]
rs9548376	0.86[EUR][1000 genomes]
rs9548377	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548379	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9548380	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9548382	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9576557	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9576558	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9635094	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39088400-39101200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:39093200-39102400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:39093800-39097400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:39094200-39101200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:39094400-39101200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:39094600-39101200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:39094800-39099200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:39094800-39101200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:39094800-39101400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:39095200-39101200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:39095600-39099200	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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