Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:40373278..40375392-chr13:40388471..40390107,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12865501	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12870649	0.89[ASN][1000 genomes]
rs35023159	0.85[ASN][1000 genomes]
rs4379951	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4432144	0.88[ASN][1000 genomes]
rs4447298	0.87[ASN][1000 genomes]
rs4556674	0.88[ASN][1000 genomes]
rs4575406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4943703	0.88[ASN][1000 genomes]
rs4943705	0.88[ASN][1000 genomes]
rs61955567	0.85[ASN][1000 genomes]
rs6563756	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6563757	0.88[ASN][1000 genomes]
rs6563758	0.88[ASN][1000 genomes]
rs6563764	0.88[ASN][1000 genomes]
rs6563765	0.86[ASN][1000 genomes]
rs6563766	0.88[ASN][1000 genomes]
rs6563768	0.87[ASN][1000 genomes]
rs7323371	0.88[ASN][1000 genomes]
rs7325743	0.88[ASN][1000 genomes]
rs7336265	0.88[ASN][1000 genomes]
rs7994425	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7997407	0.88[ASN][1000 genomes]
rs9285137	0.88[ASN][1000 genomes]
rs9532443	0.95[ASN][1000 genomes]
rs9548944	0.86[ASN][1000 genomes]
rs9548945	0.86[ASN][1000 genomes]
rs9576905	0.88[ASN][1000 genomes]
rs9594373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9603628	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1054797	chr13:40198744-40618428	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541755	chr13:40198744-40618428	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1040458	chr13:40249387-40638129	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40382600-40404000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:40386800-40392000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:40389400-40390400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr13:40389600-40391000	Enhancers	Ovary	ovary
5	chr13:40389800-40390200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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