Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12862721	0.84[EUR][1000 genomes]
rs12865501	0.92[ASN][1000 genomes]
rs12866856	0.84[EUR][1000 genomes]
rs12870649	0.82[ASN][1000 genomes]
rs35023159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35781607	0.84[EUR][1000 genomes]
rs4379951	0.92[ASN][1000 genomes]
rs4432144	0.94[ASN][1000 genomes]
rs4447298	0.93[ASN][1000 genomes]
rs4556674	0.94[ASN][1000 genomes]
rs4575406	0.92[ASN][1000 genomes]
rs4943703	0.92[ASN][1000 genomes]
rs4943705	0.94[ASN][1000 genomes]
rs6563756	0.92[ASN][1000 genomes]
rs6563757	0.92[ASN][1000 genomes]
rs6563758	0.92[ASN][1000 genomes]
rs6563764	0.94[ASN][1000 genomes]
rs6563765	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6563766	0.94[ASN][1000 genomes]
rs6563768	0.95[ASN][1000 genomes]
rs7323371	0.94[ASN][1000 genomes]
rs7325743	0.94[ASN][1000 genomes]
rs7336265	0.94[ASN][1000 genomes]
rs7994425	0.92[ASN][1000 genomes]
rs7997407	0.94[ASN][1000 genomes]
rs9285137	0.92[ASN][1000 genomes]
rs9532443	0.84[ASN][1000 genomes]
rs9548943	0.85[ASN][1000 genomes]
rs9548944	0.93[ASN][1000 genomes]
rs9548945	0.94[ASN][1000 genomes]
rs9576905	0.92[ASN][1000 genomes]
rs9594373	0.91[ASN][1000 genomes]
rs9603628	0.94[ASN][1000 genomes]
rs9603634	0.84[EUR][1000 genomes]
rs9788306	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1054797	chr13:40198744-40618428	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541755	chr13:40198744-40618428	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1040458	chr13:40249387-40638129	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40414400-40415400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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