Variant report
| Variant | rs9603634 |
|---|---|
| Chromosome Location | chr13:40433363-40433364 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | EP300 | chr13:40433087-40435078 | SK-N-SH | brain: | n/a | chr13:40434389-40434403 chr13:40434513-40434521 |
| 2 | CTCF | chr13:40433260-40433410 | HRE | kidney: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| AZU1P1 | TF binding region |
| ENSG00000212553 | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12862721 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12866856 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1555629 | 0.89[ASN][1000 genomes] |
| rs2209234 | 0.88[ASN][1000 genomes] |
| rs2324458 | 0.93[ASN][1000 genomes] |
| rs2875347 | 0.92[ASN][1000 genomes] |
| rs2985248 | 0.92[ASN][1000 genomes] |
| rs3012139 | 0.88[ASN][1000 genomes] |
| rs35023159 | 0.84[EUR][1000 genomes] |
| rs35781607 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4941945 | 0.91[ASN][1000 genomes] |
| rs61955567 | 0.84[EUR][1000 genomes] |
| rs6563765 | 0.84[EUR][1000 genomes] |
| rs7139604 | 0.94[CHB][hapmap];0.94[JPT][hapmap] |
| rs7327167 | 0.94[CHB][hapmap];0.94[JPT][hapmap] |
| rs912418 | 0.92[ASN][1000 genomes] |
| rs912421 | 0.93[ASN][1000 genomes] |
| rs9566480 | 0.93[ASN][1000 genomes] |
| rs9576907 | 0.88[ASN][1000 genomes] |
| rs9603632 | 0.88[ASN][1000 genomes] |
| rs968130 | 0.93[ASN][1000 genomes] |
| rs9788306 | 0.83[EUR][1000 genomes] |
| rs996546 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054600 | chr13:39801283-40545027 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054797 | chr13:40198744-40618428 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv541755 | chr13:40198744-40618428 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv1040458 | chr13:40249387-40638129 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
